[gmx-users] pdb file of polymer
parvezchem001 at gmail.com
Fri Jun 29 21:03:15 CEST 2012
thanx a lot Justin for reply
On Fri, Jun 29, 2012 at 2:27 PM, Justin A. Lemkul <jalemkul at vt.edu> wrote:
> On 6/29/12 2:21 PM, Parvez khan wrote:
>> Hi, I am trying to do polymer simulation with gromacs. I am new to
>> gromacs and trying to construct topology for a system of polymer
>> chains. My problem is that i am facing difficulties to creat pdb file
>> for polymer chain containing 1000 monomers. I have used PRODRG server
>> but it gives me a pdb and topology file up to maximum 41 monomers
>> chain. I am not understanding what wrong with PRODRG server. Is there
> Nothing is wrong. It's just that PRODRG limits how many atoms are allowed
> in the input structure.
>> any server or tool for generating db file.
> There are lots of ways to generate a coordinate file. Here are some
> Justin A. Lemkul, Ph.D.
> Research Scientist
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
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