[gmx-users] DNA simulations

SatyaK mail2mvskumar at yahoo.com
Sat Jun 30 23:31:13 CEST 2012

 Hello All,

 I am working on DNA simulations using GROMACS

Question: I created A.gro file that has DNA molecule and water molecules
within a box using GROMACS. I want to create a cylinder around the DNA so
that I can place some ions, or, compute axis of DNA so that I can place ions
closely to it. Could you guide me on the same.

Thanks a lot for your time and help in advance.

With Regards,

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