[gmx-users] genconf -renumber merges atom number and ID columns

Ricardo O. S. Soares ross_usp at yahoo.com.br
Thu Mar 1 19:50:02 CET 2012


Dear gmx users,

After merging two .gro files,  I set a new numbering with genconf -renumber. My results show that from the 10000th atom, the atom number and its ID are no longer separated by at least one space:


   75POP   C216 9998   0.705   4.657   3.200  0.0000  0.0000  0.0000
   75POP   H16R 9999   0.694   4.548   3.182  0.0000  0.0000  0.0000
   75POP   H16S10000   0.612   4.712   3.173  0.0000  0.0000  0.0000
   75POP   C21710001   0.731   4.684   3.350  0.0000  0.0000  0.0000

Is this a limitation from genconf? Is it limited to 10K atoms? I find it hard to be the case.

Yeah, I could write a post-processing script to add the spaces, but I'm curious about this issue.
Any help is appreciated,

Thanks!

Ricardo.

 


---
 Ricardo O. S. Soares , PhD Student.
Group of Biological Physics - Department of Physics & Chemistry
Faculty of Pharmaceutical Sciences at Ribeirão Preto - University of São Paulo.
Av.do Café, S/N - ZIP:14040-903 - Ribeirão Preto, São Paulo,  Brazil.
Phone: +55 16 36024840. 
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