[gmx-users] do_dssp segmentation fault

Mark Abraham Mark.Abraham at anu.edu.au
Sat Mar 3 08:26:36 CET 2012

On 3/03/2012 6:21 PM, arun kumar wrote:
> yes other gromacs tools are working properly ...i installed gromacs in 
> /usr/local/
> so i used the command /usr/local/gromacs/bin/./do_dssp -s md.tpr -f 
> md.xtc -o ss.xpm
> and i also set the environment variable as export 
> DSSP=/usr/local/gromacs/bin/do_dssp

You should have posted all of this information last time. See do_dssp -h 
for how to set DSSP in a way that will actually have a chance of 
working. And if it still doesn't work, do the other half of the tests I 
suggested last time before posting again :-)


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