[gmx-users] Distance between selected atoms during simulation

Mark Abraham Mark.Abraham at anu.edu.au
Mon Mar 5 11:34:03 CET 2012

On 5/03/2012 8:48 PM, James Starlight wrote:
> Dear Gromacs Users!
> I want to perform measurements of the distances between backbone as 
> well as side-chain atoms of the selected residues using gro and 
> trajectory files.
> What Gromacs program should I use for such measurements?

Check out manual section 7.4 for clues, chapter 8 for more info, and 
Appendix D for nuts and bolts. Learning to use the free resources that 
people have already given you is an efficient use of everyone's time ;-)


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