[gmx-users] grompp error - bondedtypes

[Justin A. Lemkul]

Lara Bunte wrote:
> Hi
> 
> I used the command 
> 
> 
> grompp -f em.mdp -p topol.top -c solvated.gro -o em.tpr
> 
> 
> and get this errors:
> 
> ERROR 1 [file flavin.rtp, line 1]:
>   Invalid directive bondedtypes
> 
> 
> ERROR 2 [file flavin.rtp, line 7]:
>   Not enough parameters
> 
> 
> I know where this error occurs from but I don't know what is false. Could you please take a look on my files, see appendix. 
> 

grompp should never read .rtp files, so somewhere in your files you're likely 
trying to #include it or otherwise invoke it.  There is no indication of this in 
your topology, so we can't tell where the error is.

-Justin

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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