[gmx-users] HOW TO USE SILVER ATOMS IN AMBER99 FORCE FIELD
Mark.Abraham at anu.edu.au
Wed Mar 7 21:42:46 CET 2012
On 8/03/2012 12:19 AM, Kavosh Zandsalimi wrote:
> Dear GMX users;
> I hope you are well.
> I want to simulate the interactions between DNA and Ag clusters. The
> problem is that Amber99 ff does not know silver atoms and residues.
> I have defined Ag and Au in atomtypes.atp and assigned Ag LJ
> parameters in ffnonbonded.itp. But I cannot find out how to define new
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