[gmx-users] HOW TO USE SILVER ATOMS IN AMBER99 FORCE FIELD

[Mark Abraham]

On 8/03/2012 12:19 AM, Kavosh Zandsalimi wrote:
> Dear GMX users;
> I hope you are well.
> I want to simulate the interactions between DNA and Ag clusters. The 
> problem is that Amber99 ff does not know silver atoms and residues.
> I have defined Ag and Au in atomtypes.atp and assigned Ag LJ 
> parameters in ffnonbonded.itp. But I cannot find out how to define new 
> residues.
>

http://www.gromacs.org/Documentation/How-tos/Adding_a_Residue_to_a_Force_Field

Mark
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