[gmx-users] (no subject)

[saly jackson]

Hi,

I want to add 80000 of a molecule including 6 atoms. But when I run each of
the following commands I

System total charge: 0.000
Grid: 5 x 5 x 5 cells
nri = 1948, nrj = 22927
Try 63309box_margin = 3t overlap:
Neighborsearching with a cut-off of 3
Table routines are used for coulomb: FALSE
Table routines are used for vdw:     FALSE
Cut-off's:   NS: 3   Coulomb: 3   LJ: 3
System total charge: 0.000
Grid: 5 x 5 x 5 cells
nri = 1946, nrj = 22921
Try 63310box_margin = 3t overlap:
Neighborsearching with a cut-off of 3
Table routines are used for coulomb: FALSE
Table routines are used for vdw:     FALSE
Cut-off's:   NS: 3   Coulomb: 3   LJ: 3
System total charge: 0.000
Grid: 5 x 5 x 5 cells
nri = 1930, nrj = 22871
Try 63311box_margin = 3t overlap:
Neighborsearching with a cut-off of 3
Table routines are used for coulomb: FALSE
Table routines are used for vdw:     FALSE
Cut-off's:   NS: 3   Coulomb: 3   LJ: 3
System total charge: 0.000
Grid: 5 x 5 x 5 cells
nri = 1930, nrj = 22911
Try 63312box_margin = 3t overlap:
Neighborsearching with a cut-off of 3
Table routines are used for coulomb: FALSE
Table routines are used for vdw:     FALSE
Cut-off's:   NS: 3   Coulomb: 3   LJ: 3
System total charge: 0.000
Grid: 5 x 5 x 5 cells
nri = 1930, nrj = 22885
Try 63313box_margin = 3t overlap:
Neighborsearching with a cut-off of 3
Table routines are used for coulomb: FALSE
Table routines are used for vdw:     FALSE
Cut-off's:   NS: 3   Coulomb: 3   LJ: 3
System total charge: 0.000
Grid: 5 x 5 x 5 cells
nri = 1935, nrj = 22846
Try 63314box_margin = 3t overlap:
Neighborsearching with a cut-off of 3
Table routines are used for coulomb: FALSE
Table routines are used for vdw:     FALSE
Cut-off's:   NS: 3   Coulomb: 3   LJ: 3
System total charge: 0.000
Grid: 5 x 5 x 5 cells
nri = 1936, nrj = 22827
Try 63315box_margin = 3t overlap:
Neighborsearching with a cut-off of 3
Table routines are used for coulomb: FALSE
Table routines are used for vdw:     FALSE
Cut-off's:   NS: 3   Coulomb: 3   LJ: 3
System total charge: 0.000
Grid: 5 x 5 x 5 cells
nri = 1930, nrj = 22863
Try 63316box_margin = 3t overlap:
Neighborsearching with a cut-off of 3
Table routines are used for coulomb: FALSE
Table routines are used for vdw:     FALSE
Cut-off's:   NS: 3   Coulomb: 3   LJ: 3
System total charge: 0.000
Killed
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20120308/a3be1a38/attachment.html>