[gmx-users] gromacs 4.5.5 cygwin installation error message

[Peter C. Lai]

Is fftw3 properly installed in /usr/local/lib?

On 2012-03-10 03:51:12PM -0800, Wholly Peach wrote:
>    Dear All,
>  
> For Gromacs installation, my configure command is:
>  
> ./configure --enable-shared LDFLAGS='-L/usr/local/lib' --disable-threads.
> After make, the error message is as following. 
> I am looking forward to getting a reply from you on how to avoid the error message.
> Wholly
>  
>  
> .....
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bb5): undefined reference to `_fftwf_destroy_plan'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bcb): undefined reference to `_fftwf_destroy_plan'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2be1): undefined reference to `_fftwf_destroy_plan'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bf7): more undefined references to `_fftwf_destroy_plan' follow
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2c37): undefined reference to `_fftwf_free'
> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2d17): undefined reference to `_fftwf_free'
> collect2: ld returned 1 exit status
> Makefile:387: recipe for target `libmd.la' failed
> make[3]: *** [libmd.la] Error 1
> make[3]: Leaving directory `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src/mdlib'
> Makefile:302: recipe for target `all-recursive' failed
> make[2]: *** [all-recursive] Error 1
> make[2]: Leaving directory `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src'
> Makefile:238: recipe for target `all' failed
> make[1]: *** [all] Error 2
> make[1]: Leaving directory `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src'
> Makefile:347: recipe for target `all-recursive' failed
> make: *** [all-recursive] Error 1

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Peter C. Lai			| University of Alabama-Birmingham
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