[gmx-users] gromacs 4.5.5 cygwin installation error message

[Peter C. Lai]

using --prefix=/usr/local should install fftw3 so the headers go into 
/usr/local/include and the libs go into /usr/local/lib

Also please reply to the list next time

On 2012-03-10 05:23:46PM -0800, Wholly Peach wrote:
> Dear Peter,
>  
> When I install fftw3, I use the following:
> -----
> Unpack the FFTW distribution, cd to that directory and issue 
> ./configure --enable-sse --enable-float
> then 
> make
> and 
> make install
> ----
> Will you please tell me how to have the fftw3 properly installed in /usr/local/lib?
>  
> I am looking forward to getting a reply from you.
>  
> Cheers,
> Wholley
>  
> 
> ________________________________
>  From: Peter C. Lai <pcl at uab.edu>
> To: Wholly Peach <whollypeach at yahoo.com>; Discussion list for GROMACS users <gmx-users at gromacs.org> 
> Sent: Sunday, 11 March 2012 11:20 AM
> Subject: Re: [gmx-users] gromacs 4.5.5 cygwin installation error message
>   
> Is fftw3 properly installed in /usr/local/lib?
> 
> On 2012-03-10 03:51:12PM -0800, Wholly Peach wrote:
> >    Dear All,
> >  
> > For Gromacs installation, my configure command is:
> >  
> > ./configure --enable-shared LDFLAGS='-L/usr/local/lib' --disable-threads.
> > After make, the error message is as following. 
> > I am looking forward to getting a reply from you on how to avoid the error message.
> > Wholly
> >  
> >  
> > .....
> > .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bb5): undefined reference to `_fftwf_destroy_plan'
> > .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bcb): undefined reference to `_fftwf_destroy_plan'
> > .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2be1): undefined reference to `_fftwf_destroy_plan'
> > .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bf7): more undefined references to `_fftwf_destroy_plan' follow
> > .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2c37): undefined reference to `_fftwf_free'
> > .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2d17): undefined reference to `_fftwf_free'
> > collect2: ld returned 1 exit status
> > Makefile:387: recipe for target `libmd.la' failed
> > make[3]: *** [libmd.la] Error 1
> > make[3]: Leaving directory `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src/mdlib'
> > Makefile:302: recipe for target `all-recursive' failed
> > make[2]: *** [all-recursive] Error 1
> > make[2]: Leaving directory `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src'
> > Makefile:238: recipe for target `all' failed
> > make[1]: *** [all] Error 2
> > make[1]: Leaving directory `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src'
> > Makefile:347: recipe for target `all-recursive' failed
> > make: *** [all-recursive] Error 1
> 
> > -- 
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> 
> -- 
> ==================================================================
> Peter C. Lai            | University of Alabama-Birmingham
> Programmer/Analyst        | KAUL 752A
> Genetics, Div. of Research    | 705 South 20th Street
> pcl at uab.edu            | Birmingham AL 35294-4461
> (205) 690-0808            |
> ==================================================================

-- 
==================================================================
Peter C. Lai			| University of Alabama-Birmingham
Programmer/Analyst		| KAUL 752A
Genetics, Div. of Research	| 705 South 20th Street
pcl at uab.edu			| Birmingham AL 35294-4461
(205) 690-0808			|
==================================================================