[gmx-users] protein-ligand tutorial problem

rama david ramadavidgroup at gmail.com
Sun Mar 11 17:48:01 CET 2012

                I am doing JUSTIN Protein-ligand tutorial.
I complete your Lysozyme tutorial before these one.
I complete tutorial upto the make-ndx
but after giving command grompp for nvt.tpr
 I get the following error
No molecule were defined in the system ,

I know somewhere I make mistake while following
instruction , but  I did it for 3 times,so
please help me to check my mistake
(i am using GROMACS 4.5.4 )

After giving the command make_ndx
I choose the option system..Is
 it the error source???

thank you a lot in Advance

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