[gmx-users] Segmentation fault

Justin A. Lemkul jalemkul at vt.edu
Mon Mar 12 00:34:16 CET 2012

saly jackson wrote:
> Hi all
> Would you please let me know how can I remove the following error when I 
> want to run 'mdrun -v -deffnm H'?
> Back Off! I just backed up H.log to ./#H.log.1#
> Getting Loaded...
> Reading file H.tpr, VERSION 4.5.4 (single precision)
> Starting 24 threads
> Segmentation fault

Your simulation crashed.  The fact that it did so immediately suggests 
inadequate energy minimization and/or equilibration.




Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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