[gmx-users] pdb file

[Justin A. Lemkul]

dina dusti wrote:
> Dear Gromacs Specialists,
> 
> I need pdb file of tiofen, but I didn't find it!!!
> Can I change pdb file of one compound that is as same as tiofen (for 
> example pyrrole) and give it to PRODRG for obtain gro file and topology 
> file of tiofen?
> 

There are numerous methods for producing coordinate files.  See, for instance:

http://www.gromacs.org/Documentation/File_Formats/Coordinate_File#Sources

-Justin

-- 
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Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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