[gmx-users] Gromacs installation question: Where is my Gromacs?

bestenborstel bestenborstel at gmail.com
Fri Mar 16 21:03:18 CET 2012


Sorry, David, not sure what you mean. Yes, I am the admin of my pc. I can do whatever I can :-)
What do you ask me please to do?

Am 16.03.2012 um 19:54 schrieb David van der Spoel:

> On 2012-03-16 20:49, bestenborstel wrote:
>> Thank you for your quick reply.
>> 
>> 'make links' produces:
>> 
>> Saturn:gromacs-4.5.5 gudrun$ make links
>> cd /usr/local/gromacs/bin&&  programs=`ls`&&  cd /usr/local/bin&&  \
>> 	for i in $programs; do \
>> 	   (test ! -f $i&&  ln -s /usr/local/gromacs/bin/$i . ; exit 0); \
>> 	done
>> /bin/sh: line 0: cd: /usr/local/gromacs/bin: No such file or directory
>> make: *** [links] Error 1
>> 
>> I have a /usr/local/ but there is no gromacs. Not even after running again 'sudo make -n install'
>> Sorry, I am not sure where to post this lengthy output.
>> 
> -n means "not really"
> run it without to install.
> But do you have permission to write in /usr/local?
> 
>> Thank you for your help.
>> Kind regards
>> Gudrun
>> 
> 
> 
> -- 
> David van der Spoel, Ph.D., Professor of Biology
> Dept. of Cell & Molec. Biol., Uppsala University.
> Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205.
> spoel at xray.bmc.uu.se    http://folding.bmc.uu.se
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