[gmx-users] regarding rmsd value

priya thiyagarajan priya.thiyagarajan09 at gmail.com
Tue Mar 20 06:28:24 CET 2012

hello sir,

Thanks for your kind reply...

my extended simulation for additional 10ns is completed and when i analysed
its rmsd its showing random variation.. i am trying to form micelle.. maybe
this is the reason for this random variation...

 suppose if i extend my simulation further, maybe is it possible to get
flat rmsd???

what maybe the cause for this random variation in rmsd..its varying between
2.1 to 2.5nm..

please help me with your answer..

Thanking you.
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