[gmx-users] the RMSD of Bond lengths, Bond angles, Dihedrals and Impropers

[Mark Abraham]

On 24/03/2012 9:57 PM, ahmet yıldırım wrote:
> Dear users
>
> I calculated the backbone/all protein RMSD versus the starting 
> structure or the average structure. I couldnt calculate some RMSDs.
> How can I calculate the RMSD of Bond lengths, Bond angles, Dihedrals 
> and Impropers versus the starting structure or the average structure

Probably g_bond and g_angle, followed by g_analyze on the results of the 
former.

Mark