[gmx-users] Re: Re,I have a problem with my biphasic system

[Justin Lemkul]

On 11/2/12 3:11 PM, Ali Alizadeh wrote:
> Dear Justin
>
> In your opinion, when g_density represent density profiles, this
> profile is related to particles; but what are the particles?
>
> Atoms or Residues? i think that we determine type of particles in
> .ndx, is it true?
>
> If i want to represent propane profile, what are the particles?
>

g_density considers any atoms in the chosen index group.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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