[gmx-users] converting amber distributed parameters to gromacs.

Rajiv Gandhi grajiv03 at gmail.com
Wed Nov 7 10:27:05 CET 2012


Could you please tell how do i use this script over amber file? Thanks.

On Wed, Nov 7, 2012 at 5:58 PM, Felipe Pineda, PhD <
luis.pinedadecastro at lnu.se> wrote:

> ffamber.cnsm.csulb.edu/**amb2gmx.pl<http://ffamber.cnsm.csulb.edu/amb2gmx.pl>
>
>
>
> On 11/07/2012 09:45 AM, Rajiv Gandhi wrote:
>
>> Dear Gromacs user,
>>
>> I have found the parameters file for my ligand which is available in AMBER
>> distribution parameter database, Could you advice me how do i use them in
>> running over MD in gromacs? Thanks in advance,
>>
>>
>> Regards
>>
>> Raju
>>
>
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