[gmx-users] Re: g_mindist - reg

[Justin Lemkul]

On 11/9/12 9:56 PM, Raj wrote:
> Hi,
>
> can you suggest me how can i identify or specify the hydrophobic atoms to
> the index files.
>

One possible approach is to use a .tpr file to select by atom type.  Otherwise a 
combination of residue numbers and chosen atom names will create the correct group.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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