[gmx-users] problem with EM
Ali Alizadeh
ali.alizadehmojarad at gmail.com
Tue Nov 20 07:40:17 CET 2012
Dear All users
I want my energy minimization of my system is converged to considered
value, when i do it,
It is converged because it reachs to Fmax and i see this message :
Steepest Descents converged to Fmax < 10 in 31702 steps
Potential Energy = -1.6531438e+03
Maximum force = 9.8014317e+00 on atom 162
Norm of force = 2.9060462e+00
my result:
http://alichemical.persiangig.com/document/em.jpg
When i represent profile of potential energy by g_energy, i can't see
my considered results,
I should reach this result that this link is related to it,
http://alichemical.persiangig.com/document/11.jpg
my system contains only water(512 molecules) , OPLS-AA ,TIP4P
; minim.mdp
define =
integrator = steep
nsteps = 500000
dt = .002
emtol = 10.0
emstep = 0.001
nstlist = 1
ns_type = grid
rlist = 1
coulombtype = PME
rcoulomb = 1
rvdw = 1
pbc = xyz
--
Sincerely
Ali Alizadeh
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