[gmx-users] Temperature Histogram

[Justin Lemkul]

On 11/20/12 2:13 AM, cuong nguyen wrote:
> Dear,
>
> Thanks a lot for your suggestion Justin.
> I have a box 3 3 20 and want to plot the temperature along the z axis. I
> did the commands:
> g_energy -f NVT_20ns.edr -s topol.top -o temp
> g_analyze -f temp.xvg -dist temp.xvg
>
> and got the results:
>    281.9 0  282 0.000149997  282.1 0  282.2 0  282.3 0  282.4 0  282.5 0
> 282.6 0  282.7 0  282.8 0  282.9 0  283 0  283.1 0  283.2 0  283.3 0  283.4
> 0  283.5 0  283.6 0  283.7 0.000149997  283.8 0  283.9 0  284 0  284.1
> 0.000149997  284.2 0  284.3 0.000149997
>           .........
>
> I supposed the first column should start from 0 to 20.
> Please tell me what's wrong I am doing?
>

g_energy does not plot quantities as a function of box length.

-Justin

-- 
========================================

Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================