[gmx-users] Own Coarse Grained ff

[Steven Neumann]

Dear Gmx Users,

I want to simulate protein based on my own LJ parameters between
different types of residues. I will be given sets of parametrs for
given sizes of beads to then apply them and valide by atomistic
simulations. My question:
1. What is the best way to build different sizes of beads for given
pdb file? Any softwarer?
2. How can I get bonded parametrs between my beads?

Thanks,

Steven