[gmx-users] Value of atom C in vdwradii.dat _ Protein-membrane system

Shima Arasteh shima_arasteh2001 at yahoo.com
Mon Oct 1 14:23:08 CEST 2012

Dear gmx users,

I want to simulate a system of lipid-protein. I am following the protocol of Justin's KALP-15 tutorial. 
After packing lipids around protein, I need to run genbox command. Before that, I copied vdwradii.dat. In KALP15-DPPC tutorial, it's suggested to change the value of C from 0.15 to 0.375. I want to know how did you choose 0.375 for value of C? Am I supposed to use this value in any other lipid-membrane system?

Thanks in advance.


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