[gmx-users] Dssp core dumped

Tsjerk Wassenaar tsjerkw at gmail.com
Thu Oct 4 11:45:32 CEST 2012

Hi Rama,

I bet that wasn't the only output you got. Two things can usually
happen with do_dssp. Either you chose the wrong group for analysis, or
there is a problem with the version of DSSP. Probably the latter: DSSP
syntax changed recently, and I think that GMX 4.5.5 can't deal with
that. There should be capital punishment on syntax changes on such
programs... Try digging up an older version of DSSP.



On Thu, Oct 4, 2012 at 11:18 AM, rama david <ramadavidgroup at gmail.com> wrote:
> hi Gromacs Friend i Install dssp 2.0.4 .
> I am using gromacs 4.5.5
> I put dssp in /usr/local/bin
>   I  try with export DSSP=/usr/local/bin/dssp
> When Run dssp with simple pdb file it run
> but when I run do_dssp command i got following output..
> Segmentation fault (core dumped)
> (dssp -h
> DSSP 2.0.4 options:
>   -h [ --help ]         Display help message )
> I also goes through archive but not find out the answer.
> Please tel me how to figure out these problem
> With best wishes and regards..
> rama david
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> * Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

Tsjerk A. Wassenaar, Ph.D.

post-doctoral researcher
Biocomputing Group
Department of Biological Sciences
2500 University Drive NW
Calgary, AB T2N 1N4

More information about the gromacs.org_gmx-users mailing list