[gmx-users] Secondary structure after InflateGRO step - protein in lipid membrane

[Shima Arasteh]

 Hi,

I'm doing the protein insertion into the lipid membrane. After shrinking for 30 times, I visualized the system, but the secondary structure of protein is still incomplete . How come? I finished the InflateGRO step.

Thanks for your suggestions in advance.

Sincerely,
Shima