[gmx-users] error during minimization

[Justin Lemkul]

On 10/11/12 10:27 AM, Shine A wrote:
> Sir,
>
>     I am studying the dynamics of membrane proteins using KALP-15 in DPPC.
> But during minimization getting error like this..
>
>      There is no domain decomposition for 4 nodes that is compatible with
> the given box and a minimum cell size of 18.5346 nm
>     Change the number of nodes or mdrun option -rdd
>      Look in the log file for details on the domain decomposition
>
>      why it happens? can you give me a solution for this?
>

http://www.gromacs.org/Documentation/Errors#There_is_no_domain_decomposition_for_n_nodes_that_is_compatible_with_the_given_box_and_a_minimum_cell_size_of_x_nm

-Justin

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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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