[gmx-users] error during minimization

Justin Lemkul jalemkul at vt.edu
Thu Oct 11 16:41:14 CEST 2012

On 10/11/12 10:27 AM, Shine A wrote:
> Sir,
>     I am studying the dynamics of membrane proteins using KALP-15 in DPPC.
> But during minimization getting error like this..
>      There is no domain decomposition for 4 nodes that is compatible with
> the given box and a minimum cell size of 18.5346 nm
>     Change the number of nodes or mdrun option -rdd
>      Look in the log file for details on the domain decomposition
>      why it happens? can you give me a solution for this?




Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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