[gmx-users] VMD problem?
Peter C. Lai
pcl at uab.edu
Mon Oct 15 08:46:14 CEST 2012
Depending on the # of atoms, 6000 frames may exceed the amount of ram a 32bit
application can address (4GB). If you're having problems with the 64bit
version, you should probably ask the vmd-l list.
The only workaround other than that is trjconv -skip and make a trajectory
file that skips frames and will load under 4GB of ram.
On 2012-10-15 08:15:34AM +0200, Albert wrote:
> I've installed gromacs in my macbookPro with 10.8 OS system. I am
> trying to import gromacs trajectory which contains 6000 frames. However,
> the VMD always clashed
> VMD(552,0xac879a28) malloc: *** mmap(size=831488) failed (error code=12)
> *** error: can't allocate region
> *** set a breakpoint in malloc_error_break to debug
> libc++abi.dylib: terminate called throwing an exception
> /Applications/VMD 1.9.1.app/Contents/MacOS/startup.command: line 7:
> 552 Abort trap: 6 "$p/../Resources/VMD.app/Contents/MacOS/VMD" $*
> Does anybody have any idae how to solve this problem? I try to install
> the 64bit VMD, but it crashed as soon as it start up.....
> thank you very much
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Peter C. Lai | University of Alabama-Birmingham
Programmer/Analyst | KAUL 752A
Genetics, Div. of Research | 705 South 20th Street
pcl at uab.edu | Birmingham AL 35294-4461
(205) 690-0808 |
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