[gmx-users] how can I create gromos and top file for graphene

[Yihua Zhou]

Dear Sir/Madam

I am trying to use GROMACS to simulate DNA translocation through graphene
nanopore, however, I don’t know how to create the *.top and *.gro files for
my case, I know I can use pdb2gmx to obtain topology and gromos file for
DNA, but I don’t know how to obtain the necessary files for grapheme, could
you please give me some suggestions?

Best regards

Yihua Zhou