[gmx-users] g_density, number density
Ali Alizadeh
ali.alizadehmojarad at gmail.com
Tue Oct 16 13:55:24 CEST 2012
Dear All users
1- When i use these commands for generating number density profile
I see completely different results(in z direction, length in z
direction is 8, number density versus of z)
g_density -f md.xtc -s md.tpr -dens number -o dens8.xvg -d z -symm -center
It's trend is increasing(from z=0 to z=2 then decreasing(fall to zero,
z= 2-5) and then increasing(z=5-7.5)
g_density -f md.xtc -s md.tpr -dens number -o dens8.xvg -d z
But in the case,It's trend is decreasing(z=0-2.5) then
increasing(suddenly to maximum, z=2.5-5) and then decreasing(z=5-8)
2- Number density profile Should be symmetric?
--
Sincerely
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