[gmx-users] Fwd: Fwd: I have a symmetric simulation box

Ali Alizadeh ali.alizadehmojarad at gmail.com
Fri Oct 19 02:06:08 CEST 2012

---------- Forwarded message ----------
From: Ali Alizadeh <ali.alizadehmojarad at gmail.com>
Date: Fri, Oct 19, 2012 at 3:28 AM
Subject: Re: Fwd: I have a symmetric simulation box
To: Justin Lemkul <jalemkul at vt.edu>

Dear Justin

I ran my simulation for 8 nano second(1 ns to 8 ns) but my results was
more than bad,

my command for analysis of out put files:

g_density -f md.xtc -s md.tpr -dens number -o  dens2.xvg  -d z

xmgrace dens2.xvg



Ali Alizadeh
University of Tehran
College of engineering(Fanni)
Department of chemical engineering
IPE (Institute of Petroleum Engineering)
M.Sc Candidate, class of 2013
B.Sc Graduate 2011(University of Tehran,Fanni)

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