[gmx-users] some warnings
Albert
mailmd2011 at gmail.com
Thu Oct 25 14:52:20 CEST 2012
hello:
I am using GBSA solvent for replica exchange simulation. However, I've
got three wanrnigns when I generate .tpr file:
NOTE 1 [file eq_11.mdp]:
Tumbling and or flying ice-cubes: We are not removing rotation around
center of mass in a non-periodic system. You should probably set
comm_mode = ANGULAR.
NOTE 2 [file eq_11.mdp]:
Using GBSA with nstgbradii<1, setting nstgbradii=1
NOTE 3 [file eq_11.mdp]:
Value of sa_surface_tension is < 0. Changing it to 2.05016 or 2.25936
kJ/nm^2/mol for Still and HCT/OBC respectively
thank you very much
Albert
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