[gmx-users] Holes in the solvent!

Arman M. Soufiani armansoufiani at gmail.com
Fri Oct 26 21:25:48 CEST 2012

Dear Gromacs users,

I am simulating a protein on a polymer surface for further adsorption free
energy calculation. 
However, after performing the NVT run either for short or long durations I
found out that couple of holes appear in the physiological saline solution
Additionally, even proceeding with a long NPT run the holes are still
present in the system.
I would be thankful if you could direct me what could be source of such a
strange outcome.  

Best Wishes


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