[gmx-users] About Solvation of Lipid Protein

[Justin Lemkul]

On 10/27/12 5:16 AM, vidhya sankar wrote:
> Dear Justin Thank you for your Previous reply
>
>                                                                           I am  following your Protein-lipid Tutorial ( KALP peptide in DPPC)
>
> In your tutorial
>
>   How many   Number of Water Molecules  you  needed   to  solvate Lipid -protein
> When I solvate The Number of Water Molecules are   57647
> Is it Too high Or Ok

If you are working with the tutorial system, that's too many water molecules.  I 
can't remember the exact number, but I'm sure it's lower.  If you're working 
with your own system, I'm not going to try to blindly guess at what might be 
correct.

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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