[gmx-users] g_density: Segmentation fault

[Elisabeth]

Hi Justin,

Do I have to read less frames to circumvent the problem? I know g_density
has been used for this purpose so there should be a way to resolve this. I
am reading 1000 frames...

Thanks


On 2 April 2013 12:40, Justin Lemkul <jalemkul at vt.edu> wrote:

>
>
> On 4/2/13 11:57 AM, Elisabeth wrote:
>
>> Dear all,
>>
>> I am trying to get the density profile for my liquid-vacuum interface
>> using
>> g_density -f trr -s tpr however g_density gives Segmentation fault. Does
>> anyone had clue what could be wrong? Please comment, Thanks.
>>
>> Group     0 (         System) has  XXX elements
>> Group     1 (          Other) has  XXX elements
>>
>> Select a group: 0
>> Selected 0: 'System'
>> trn version: GMX_trn_file (single precision)
>> Last frame     100000 time 10000.000
>> Segmentation fault
>>
>>
> Segmentation faults are generic memory errors.  Without a debugging
> backtrace, there's very little to suggest.
>
> -Justin
>
> --
> ==============================**==========
>
> Justin A. Lemkul, Ph.D.
> Research Scientist
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin>
>
> ==============================**==========
> --
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users>
> * Please search the archive at http://www.gromacs.org/**
> Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before posting!
> * Please don't post (un)subscribe requests to the list. Use the www
> interface or send it to gmx-users-request at gromacs.org.
> * Can't post? Read http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists>
>