[gmx-users] install gromacs 4.6.1 on 64bit Windows 7 cygwin

Mark Abraham mark.j.abraham at gmail.com
Fri Apr 12 19:00:28 CEST 2013


On Fri, Apr 12, 2013 at 5:53 PM, Hua Lu <H.Lu at greenwich.ac.uk> wrote:

> Hi!
> I got the following error message while compiling gromacs using a complete
> installation of Cygwin on 64bit windows 7. Any idea what the problem is?
>

Yes, you can't read those files. We can't know why. You wrote them as a
different user, or with different permissions, or something.

Mark

This is what I have used to install as detailed on the gromacs website:
>
> cd gromacs-4.6.1
> mkdir build
> cd build, cmake .. -DGMX_BUILD_OWN_FFTW=ON
> make
>
> the error occur at the last step 'make'
>
>
> Thanks, Hua
>
> ......
> Scanning dependencies of target gmx
> [  0%] Building C object src/gmxlib/CMakeFiles/gmx.dir/3dview.c.o
> /cygdrive/d/gromacs-4.6.1/src/gmxlib/3dview.c:39:20: fatal error:
> /cygdrive/d/gromacs-4.6.1/build/src/config.h: Permission denied
> compilation terminated.
> src/gmxlib/CMakeFiles/gmx.dir/build.make:57: recipe for target
> `src/gmxlib/CMakeFiles/gmx.dir/3dview.c.o' failed
> make[2]: *** [src/gmxlib/CMakeFiles/gmx.dir/3dview.c.o] Error 1
> CMakeFiles/Makefile2:1238: recipe for target
> `src/gmxlib/CMakeFiles/gmx.dir/all' failed
> make[1]: *** [src/gmxlib/CMakeFiles/gmx.dir/all] Error 2
> Makefile:146: recipe for target `all' failed
> make: *** [all] Error 2
>
>
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