[gmx-users] Peptide distance matrix

Steven Neumann s.neumann08 at gmail.com
Mon Apr 15 15:59:14 CEST 2013

Dear Gmx Users,

I want to calculate a distance matrix of each amino acid (1, 2, ...25)
averaged over simulation time with all amino acids. So matrix of

1) is there a tool which can do this or just the use of g_dist fof 600
(25x25 - 25) times?
2) Would you recommend any nice visualisation tool (bioinformatic
software) to obtain colorful matrix?

Thank you in advance,


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