[gmx-users] Announcement: new version of GridMAT-MD available

[Albert]

It seems to be good. However, I always have problem to compile matpack 
which is needed by xmatrix... I sent the author an email, but never 
replied..

here is the log file:


creating libpng12.la
(cd .libs && rm -f libpng12.la && ln -s ../libpng12.la libpng12.la)
make[4]: Leaving directory 
`/home/albert/Desktop/matpack/source/3rdparty/libpng'
make[3]: Leaving directory 
`/home/albert/Desktop/matpack/source/3rdparty/libpng'
(cd Matutil     ; make )
make[3]: Entering directory `/home/albert/Desktop/matpack/source/Matutil'
g++ -ansi -std=c++0x -m64 -DXPM_INCLUDE="<X11/xpm.h>" -c -s -Wall -O3 
-fforce-addr -funroll-loops -felide-constructors -I ../../include 
mpromannumber.cpp
g++ -ansi -std=c++0x -m64 -DXPM_INCLUDE="<X11/xpm.h>" -c -s -Wall -O3 
-fforce-addr -funroll-loops -felide-constructors -I ../../include 
mpcontextsave.cpp
g++ -ansi -std=c++0x -m64 -DXPM_INCLUDE="<X11/xpm.h>" -c -s -Wall -O3 
-fforce-addr -funroll-loops -felide-constructors -I ../../include 
mpparsetool.cpp
g++ -ansi -std=c++0x -m64 -DXPM_INCLUDE="<X11/xpm.h>" -c -s -Wall -O3 
-fforce-addr -funroll-loops -felide-constructors -I ../../include 
mpgetopt.cpp
mpgetopt.cpp: In member function ‘bool 
MATPACK::MpGetopt::assign(MATPACK::MpGetopt::OptNode*, const char**, 
std::string&)’:
mpgetopt.cpp:314: error: ‘strtol’ was not declared in this scope
mpgetopt.cpp:330: error: ‘strtoul’ was not declared in this scope
mpgetopt.cpp:345: error: ‘strtod’ was not declared in this scope
g++ -ansi -std=c++0x -m64 -DXPM_INCLUDE="<X11/xpm.h>" -c -s -Wall -O3 
-fforce-addr -funroll-loops -felide-constructors -I ../../include 
mptimerqueue.cpp
make[3]: *** [mpgetopt.o] Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory `/home/albert/Desktop/matpack/source/Matutil'
make[2]: *** [static_lib] Error 2
make[2]: Leaving directory `/home/albert/Desktop/matpack/source'
make[1]: *** [lib] Error 2
make[1]: Leaving directory `/home/albert/Desktop/matpack'
make: *** [allstatic] Error 2


thank you very much

Albert


On 04/18/2013 11:19 PM, Justin Lemkul wrote:
>
> Greetings all,
>
> I wanted to announce that we have released version 2.0 of GridMAT-MD.  
> Many of you use this program for membrane analysis and I am pleased to 
> note that we have introduced many new features based on your feedback, 
> including trajectory support (multi-frame .pdb and .gro files).  
> Please visit our webpage for details: 
> http://www.bevanlab.biochem.vt.edu/GridMAT-MD/
>
> We hope you continue to find our software useful.  Please contact me 
> if any issues arise.
>
> -Justin
>