[gmx-users] Re: trjconv center problem

[Justin Lemkul]

On 4/19/13 4:28 PM, Brad Van Oosten wrote:
> Checking file md50.xtc
> Reading frame       0 time    0.000
> # Atoms  27392
> Precision 0.001 (nm)
> Last frame      50000 time 100000.000
>
>
> Item        #frames Timestep (ps)
> Step         50001    2
> Time         50001    2
> Lambda           0
> Coords       50001    2
> Velocities       0
> Forces           0
> Box          50001    2
>
> Appears to be evenly spaced
>

So then, to clarify, what you're saying is trjconv skips frames when writing 
output?  That was what I was trying to determine from your original post.  What 
does gmxcheck tell you about the output trajectory?

-Justin

-- 
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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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