[gmx-users] Re:Re:gmx-users Digest, Vol 108, Issue 130

[Justin Lemkul]

On 4/21/13 11:02 AM, aixintiankong wrote:
> Dear Justin,
> i really need you help and i will wait for your help ! i am a newer and there anyone can help me , i hope the frames extracted  from a MD  can align. i really don't know why this happen.

Molecules diffuse, that's why.  Use trjconv -fit as I suggested before.

-Justin

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Justin A. Lemkul, Ph.D.
Research Scientist
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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