[gmx-users] Fwd: Selecting the temperature distribution
bharat gupta
bharat.85.monu at gmail.com
Tue Apr 23 13:30:18 CEST 2013
I have got the temperature distribution from the same link, but how to
select evenly spaced temperatures for 56 replicas, I need to know that
On Tue, Apr 23, 2013 at 6:21 PM, massimo sandal <devicerandom at gmail.com>wrote:
> Look here: http://folding.bmc.uu.se/remd/
>
>
>
> 2013/4/23 bharat gupta <bharat.85.monu at gmail.com>
>
> > Dear gmx users,
> >
> > I am planning to run REMD for a peptide (406 atoms )+ solvent system
> > (27639). The temperature range I selected is from 300 to 500. I want to
> > select appropriate temp. for 56 replicas. I randomly chose some temp
> > distribution and the exchange probabilities was 0.0. I know that we can
> use
> > the formula Ti=T0*ek*i, but what is the value for i and K here ??
> >
> > --------
> > BHARAT
> > --
> > gmx-users mailing list gmx-users at gromacs.org
> > http://lists.gromacs.org/mailman/listinfo/gmx-users
> > * Please search the archive at
> > http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> > * Please don't post (un)subscribe requests to the list. Use the
> > www interface or send it to gmx-users-request at gromacs.org.
> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> >
> --
> gmx-users mailing list gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> * Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-request at gromacs.org.
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
--
More information about the gromacs.org_gmx-users
mailing list