[gmx-users] Re: COM of a molecule

Brad Van Oosten bv07ay at brocku.ca
Fri Aug 2 15:08:18 CEST 2013

If i understand the problem correctly, you can plot the com of any group of
atoms as a function of time with g_traj.  Create an index file of whatever
atoms you want using make_ndx then use g_traj with -com flag to plot com of
the group.

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