[gmx-users] Re: Mean Square Displacement: gromacs 4.5 Vs gromacs 4.6.1

[Guillaume Chevrot]

Hi,

I effectively refer to the MSD of the protein. 

My simulation is different compared to the simulation of a lipid bilayer and
the "normal" MSD for a protein in water should be equivalent to the red
plot.

I forgot to mention but the MSD are obtained from 10 ns NVE simulations.

Regards,

Guillaume



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