[gmx-users] Re: starting temperature equilibration phase

[ypca]

I was trying to calculate rmsd for minimized structures in vmd, and when I
choose all the residues of the protein it gave a very high value (16
angstron), that makes no sense with the alignment of both structures.
I'm so sorry, i made a confusion and asked like a problem in gromacs. 

Thank you very much!



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