[gmx-users] About running Production simulation in GPU with twinrange cut-off
vidhya sankar
scvsankar_agr at yahoo.com
Sun Aug 11 09:02:29 CEST 2013
Thank you Justin
To check Performance in GPU i Need to run simulation with same parameters for r coulomb = rvdw
rlist = 0.9 ; short-range neighborlist cutoff (in nm)
rcoulomb = 1.4 ; short-range electrostatic cutoff (in nm)
rvdw = 1.4
But i need to use twin range interaction with rvdw = 1.4; r coulomb = 0.9 in GPU
May i use different option -nb or -tunepme option of mdrun
instead -testverlet
But in one mail to me you said that the defaut parameters for Gromos96 53A6,
nstlist = 5
rlist = 0.9
rcoulomb = 0.9
rvdw = 1.4
but if i run on GPU regularly i need to change rcoulomb = 1.4 from 0.9 Will it Affect the result ?
or is it reasonable to change ?
Thanks in Advance
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