[gmx-users] About Running production simualtion in GPU

[Justin Lemkul]

On 8/11/13 8:50 AM, vidhya sankar wrote:
> Thank you Justin for your pervious reply
>
>                                                              As you mailed me When using PME,   the rcoulomb is little bit fiexible and Validationof Modification is necessary .  But How to Validate Such Modification ?  i request you Humbly to give Little bit claear idea . Also  What is the Procedure to Do Validation.?

At minimum, you would probably have to validate that the solvation free energies 
and liquid densities are unaffected, essentially reproducing the original force 
field parametrization paper with the new cutoffs.  The approach will be 
different for other force fields.

-Justin

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Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalemkul at outerbanks.umaryland.edu | (410) 706-7441

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