[gmx-users] Re: Hai friends (balu)

Muhammad Naqvi mnaqvi at ryerson.ca
Fri Aug 16 19:23:52 CEST 2013

If the goal is to simply count the secondary structure, pass the dssp
output file through grep "__" dssp_output.xpm | wc

Fill in the dssp code for each secondary structure in the underline
separately. Grep would extract all characters that fit that pattern and wc
would count it.

Hope that helps.

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