[gmx-users] VDW Cut-off vs Switch with CHARMM force field

Gianluca Interlandi gianluca at u.washington.edu
Sun Aug 25 05:11:39 CEST 2013


> vdwtype = switch
> rlist = 1.2
> rlistlong = 1.4
> rvdw = 1.2
> rvdw-switch = 1.0
> rcoulomb = 1.2

I'm confused about the difference between rlist and rlistlong. I am 
planning to also setup an implicit solvent simulation with GBSA and 
CHARMM-FF. Would this make sense?

rlist                    = 1.4

coulombtype              = Shift
rcoulomb_switch          = 0
rcoulomb                 = 1.2

vdw-type                 = Switch
rvdw_switch              = 1.0
rvdw                     = 1.2

Thanks!

      Gianluca


> ==================================================
>
> Justin A. Lemkul, Ph.D.
> Postdoctoral Fellow
>
> Department of Pharmaceutical Sciences
> School of Pharmacy
> Health Sciences Facility II, Room 601
> University of Maryland, Baltimore
> 20 Penn St.
> Baltimore, MD 21201
>
> jalemkul at outerbanks.umaryland.edu | (410) 706-7441
>
> ==================================================
> -- 
> gmx-users mailing list    gmx-users at gromacs.org
> http://lists.gromacs.org/mailman/listinfo/gmx-users
> * Please search the archive at 
> http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> * Please don't post (un)subscribe requests to the list. Use the www interface 
> or send it to gmx-users-request at gromacs.org.
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>

-----------------------------------------------------
Gianluca Interlandi, PhD gianluca at u.washington.edu
                     +1 (206) 685 4435
                     http://artemide.bioeng.washington.edu/

Research Scientist at the Department of Bioengineering
at the University of Washington, Seattle WA U.S.A.
                     http://healthynaturalbaby.org
-----------------------------------------------------



More information about the gromacs.org_gmx-users mailing list