[gmx-users] Re: error with g_dist

chinnu657 cma1g09 at soton.ac.uk
Mon Aug 26 22:39:50 CEST 2013

I'm basically trying to see how the distance between the ligand and protein
changes with time using their centres of mass and the only way I've come
across is by using g_dist.

I'm pasting the contents from the terminal after the doing a gmxcheck on the
md_0_1.xtc file which is my .xtc file from the production simulation.

Checking file md_0_1.xtc
Reading frame       0 time    0.000  
# Atoms  33037
Precision 0.001 (nm)
Last frame       1000 time 2000.000  

Item        #frames Timestep (ps)
Step          1001    2
Time          1001    2
Lambda           0
Coords        1001    2
Velocities       0
Forces           0
Box           1001    2

can I attach the index.ndx file again? Was this what you were looking for?
index.ndx <http://gromacs.5086.x6.nabble.com/file/n5010738/index.ndx>  

thank you,

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