[gmx-users] Re: error with g_dist

[chinnu657]

I'm basically trying to see how the distance between the ligand and protein
changes with time using their centres of mass and the only way I've come
across is by using g_dist.

I'm pasting the contents from the terminal after the doing a gmxcheck on the
md_0_1.xtc file which is my .xtc file from the production simulation.

Checking file md_0_1.xtc
Reading frame       0 time    0.000  
# Atoms  33037
Precision 0.001 (nm)
Last frame       1000 time 2000.000  


Item        #frames Timestep (ps)
Step          1001    2
Time          1001    2
Lambda           0
Coords        1001    2
Velocities       0
Forces           0
Box           1001    2

can I attach the index.ndx file again? Was this what you were looking for?
index.ndx <http://gromacs.5086.x6.nabble.com/file/n5010738/index.ndx>  

thank you,
chinnu



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