[gmx-users] deformation in cnt

[Atila Petrosian]

Dear Justin

Thanks for your reply.

After energy minimization, all carbon atoms are in true position,
inside box but again, both ends of cnt were deformed, same problem I
had before I add bond length to the length of CNT in z dimension of box.

You mentioned " possibly poor input geometry ". Please tell me how to
obtain better input geometry.

I confused. How to solve this problems?