[gmx-users] selection around circle

jkrieger at mrc-lmb.cam.ac.uk jkrieger at mrc-lmb.cam.ac.uk
Tue Dec 17 19:56:15 CET 2013


I think g_select does something like this. I am trying to do something
similar: make a selection of water within 5A or so of a residue in my
protein. Also need help please.

> Dear Gmx Users,
>
> I have my carbon nanotube (lenght z axis) with proteins attached to it. I
> wish to collect RDF of given type of amino acids away from the surface in
> two dimensions (xy). Z axis does not interest me. That would make a circle
> then. My question: how to make a specific index group of this circle? Any
> ideas appreciated.
>
> Steven
> --
> Gromacs Users mailing list
>
> * Please search the archive at
> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before
> posting!
>
> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
>
> * For (un)subscribe requests visit
> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send
> a mail to gmx-users-request at gromacs.org.
>




More information about the gromacs.org_gmx-users mailing list